Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
37526376.18782937523932e-080.9099715678716360.8571541584168490.475199078722377
37533277.0460732799144e-070.4905557880635660.9591171742953390.240767817989943
37559087.24202795709589e-060.182991461004490.5899768746884350.786341576309887
37568991.08103388470934e-050.6627996185040250.8176412299107680.229339463146069
37556981.27553099845981e-050.3149278437084110.7033910213522390.751353532140289

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX3752637.TA.PASSAC=69GT1/11/11/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/11/11/11/10/00/00/01/10/01/10/00/00/01/10/00/00/01/10/00/00/01/10/00/01/10/00/00/00/01/00/00/00/00/00/01/11/11/10/01/10/00/01/10/01/10/01/10/00/01/11/11/11/10/00/01/11/11/10/00/00/00/01/10/00/00/01/10/00/00/00/01/10/00/01/11/10/00/00/01/11/11/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/01/11/10/01/10/01/10/00/00/00/00/00/01/10/00/11/10/01/11/11/11/10/01/10/00/00/01/10/01/10/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/00/00/00/01/10/01/11/11/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/01/1
chrX3753327.GC.PASSAC=61GT1/11/11/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/01/11/11/10/00/01/10/01/10/00/00/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/00/01/00/00/00/00/00/01/11/11/10/00/00/00/01/10/00/00/01/10/00/01/11/11/11/10/00/01/11/10/00/00/00/00/01/11/10/00/01/10/00/00/00/01/10/00/01/11/10/00/00/01/11/11/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/01/11/10/01/10/00/00/00/00/00/00/00/00/00/00/01/10/01/11/11/11/10/01/10/00/00/01/10/01/10/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/01/11/11/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/1
chrX3753327.GGG.PASSAC=1GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX3755908.GA.PASSAC=77GT0/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/01/11/11/11/11/10/00/00/00/00/01/00/01/00/00/00/01/10/00/00/01/11/11/10/01/11/11/00/01/11/10/00/01/10/01/10/00/00/01/10/01/11/10/00/00/00/01/11/10/01/10/01/10/01/10/00/00/00/00/01/11/10/00/00/01/11/10/01/10/00/01/11/11/11/10/01/10/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/10/00/01/11/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/01/10/01/10/00/00/00/01/10/01/11/11/10/00/00/01/10/00/00/01/11/10/01/10/00/01/11/10/00/01/10/10/01/11/10/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/11/10/00/01/11/10/01/10/00/00/0
chrX3756899.ATAGCCAGTTAGCTAATATTATTGTATTGTAAACATATTTTAAAAAGTAAACCGATAGCCAGTTAGCTAATATTATTGTATTGTAAACATATTTTAAAAAGTAAACCA,ATAGCCAGTTAGCTAATATTATTGTATTGTAAACATATTTTAAAAAGTAGACCA,ATAGCCAGTTAGCTAATATTATTGTATTGTAAACATATTTTAAAAAGTAGACCG,ATATTTTAAAAAGTAAACCG,ATATTTTAAAAAGTAGACCA,TTGATATTTTAAAAAGTAGACCG,TTGTAAACATATTTTAAAAAGTAGACCG.PASSAC=3,2,3,9,56,33,1GT5/55/55/56/35/06/66/66/60/06/60/06/60/00/06/60/00/05/50/00/00/00/00/06/65/50/05/55/50/00/00/05/50/05/50/05/56/60/00/00/00/05/20/40/00/05/50/00/05/50/00/00/40/05/66/66/30/00/00/00/05/05/50/00/00/00/05/50/00/00/05/50/00/05/10/05/55/50/00/05/50/05/50/00/00/00/00/05/50/00/00/00/40/00/06/65/50/00/05/55/50/06/66/65/55/15/50/05/55/00/06/66/70/06/60/00/06/66/65/56/60/00/00/05/56/60/00/06/65/50/40/00/05/50/00/00/00/00/06/60/55/10/05/50/05/55/50/05/50/00/43/35/50/00/00/40/06/65/00/00/06/60/06/60/00/00/05/50/00/06/60/00/00/40/00/45/55/55/50/00/06/66/65/50/05/20/00/00/06/66/60/40/00/00/00/00/05/55/50/00/05/00/05/56/65/5
chrX3755698.CT.PASSAC=76GT0/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/01/11/11/11/11/10/00/00/00/00/01/10/01/10/00/00/01/10/00/00/01/11/11/10/01/11/11/00/01/11/10/00/01/10/01/10/00/00/01/10/01/11/10/00/00/00/01/11/10/01/10/01/10/01/10/01/10/00/00/01/11/10/00/00/01/11/10/01/10/00/01/11/11/10/00/01/10/00/00/00/00/00/01/10/00/00/01/10/01/10/00/01/10/00/01/11/11/10/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/01/00/01/10/00/00/00/00/01/00/01/10/00/00/00/01/00/01/11/10/00/00/00/01/10/00/00/01/11/10/01/10/00/01/11/10/00/01/10/00/01/11/10/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/11/10/00/01/11/10/01/10/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX3752637CTCGGTTGTCTTCTGTCAAGCCTCTTTGGTGGGCGAGTATTGCTCAGGTCG
chrX3753327AGAATAGTATGGTTGGTTATTCGGGTGGGACAAAAAAGGATCTGTCAAAAC
chrX3753327AGAATAGTATGGTTGGTTATTCGGGTGGGACAAAAAAGGATCTGTCAAAACDmelanogaster-FlyFactorSurvey-CG5669_SANGER_10_FBgn0039169
chrX3755908TGGGGTTGCCAAGAAGTTATCACTGCCCGATGGAGCACATCTCGTTGCTGT
chrX3756899CCTAACTGAAGTTTTAAATTGTTGATAGCCAGTTAGCTAATATTATTGTATNA
chrX3755698CCACTCGCACCACTTTCGCTACTTCGGATAGCCGCGTCTTCGATGCCTCGADmelanogaster-JASPAR_2014-pan-MA0237.2