Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
44366675.2911100329559e-120.2842294612615740.7195741384563190.348730560922264
44240719.46059875039741e-060.9726341172784350.9552546731951040.885528316906029
44241431.46900313871762e-050.8828576304779720.9848113684794530.913746829975617
44300498.36676906636872e-050.04784896608167540.4842692378751310.40836313939669
44241980.0001280318703721510.9189138588573930.9703540956292210.982761016426254

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX4436667.GT.PASSAC=42GT0/00/00/00/00/01/10/00/01/10/00/01/10/00/00/01/10/00/00/00/00/00/01/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/10/01/10/00/01/10/01/10/00/01/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/01/11/10/01/11/10/01/10/00/00/00/00/00/00/01/10/00/00/00/01/11/10/01/10/01/10/00/00/00/01/11/11/10/00/0
chrX4424070.ACA,AA,AAAC,AAC.PASSAC=6,8,6,32GT0/00/00/00/00/00/02/40/00/00/00/00/00/00/00/00/04/00/00/00/00/00/00/00/04/44/00/00/00/00/00/40/00/00/00/00/04/00/00/00/04/34/30/00/00/04/40/00/00/00/00/00/00/00/44/04/00/00/00/00/00/00/00/00/00/04/30/00/00/00/20/00/20/00/00/04/00/30/00/00/00/00/10/00/00/04/40/00/00/00/04/00/04/01/11/04/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/40/00/00/00/04/40/00/20/00/00/00/00/00/04/30/04/00/00/00/00/00/00/00/01/10/04/20/01/00/04/00/00/04/00/00/00/00/00/04/04/00/00/40/00/00/00/00/01/04/00/00/00/00/00/00/00/00/20/00/00/00/04/00/00/00/20/00/00/04/00/00/00/00/00/00/00/00/04/40/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX4424071.CACC,CC,CCC.PASSAC=11,9,124GT3/30/03/30/00/03/30/30/00/03/33/13/30/03/33/30/00/33/30/03/33/30/03/13/30/00/00/03/30/03/30/33/30/00/03/33/30/00/00/03/33/30/03/30/03/33/33/33/30/00/00/03/33/30/13/33/33/33/33/33/30/03/13/30/02/30/03/33/30/02/30/00/13/33/33/30/00/00/03/33/33/32/13/30/00/00/00/00/00/03/23/33/33/00/00/00/03/33/33/33/33/30/00/03/33/33/33/33/11/03/30/23/33/33/30/00/03/33/33/33/30/03/03/33/33/03/33/30/00/00/03/30/00/03/32/10/03/30/03/33/00/00/03/30/02/10/03/33/03/30/03/30/03/30/00/00/00/00/03/33/33/30/03/33/03/33/03/30/03/30/02/33/33/33/13/30/03/33/30/03/33/33/30/00/03/33/30/03/33/33/33/30/00/03/33/33/33/33/33/33/33/33/33/23/30/0
chrX4424143.TA,C.PASSAC=7,91GT2/20/02/20/00/02/20/00/00/02/21/12/20/02/22/20/00/00/00/02/22/20/01/12/20/00/00/02/20/02/20/02/20/00/02/22/20/00/00/02/20/00/02/20/02/20/02/22/20/00/00/00/02/20/00/00/02/22/22/22/20/02/21/10/00/00/02/22/20/00/00/00/02/22/22/20/00/00/02/22/22/20/02/20/00/00/00/00/00/00/00/00/00/00/00/00/02/22/22/22/22/20/00/02/22/22/22/21/10/02/20/02/22/20/00/00/02/22/20/02/20/00/02/22/20/02/22/20/00/00/02/20/00/02/20/00/02/20/02/20/00/00/01/10/00/00/00/10/02/20/02/20/00/00/00/00/00/00/02/22/20/20/00/02/22/20/02/20/02/20/00/02/22/21/12/20/02/22/20/02/22/22/20/00/02/22/20/02/22/22/22/20/00/02/22/22/22/22/22/22/22/22/20/02/20/0
chrX4430049.CT.PASSAC=21GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/01/10/00/01/10/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/01/10/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/10/00/01/10/01/10/00/00/00/00/00/01/10/00/0
chrX4424198.GC.PASSAC=100GT1/10/01/10/00/01/10/00/00/01/11/11/11/11/11/10/00/00/00/01/11/11/11/11/10/00/00/01/10/01/10/01/10/00/01/11/10/00/00/01/10/00/01/10/01/10/01/11/10/00/00/00/01/10/00/00/01/11/11/11/10/01/11/10/00/00/01/11/10/00/00/00/01/11/11/10/00/00/01/11/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/11/11/10/00/01/11/11/11/11/10/11/10/01/11/10/00/01/11/11/10/01/10/00/01/11/10/01/11/10/00/00/01/10/00/01/10/01/11/10/01/10/00/00/01/10/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/10/01/10/01/10/00/00/01/11/11/10/01/11/10/01/11/11/10/00/01/11/10/01/11/11/11/10/00/01/11/11/11/11/11/11/11/11/10/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX4436667GCAGCACTGGATCGTCCAGTGACAGTTGACATATATTCCTATCAGCGGCGADmelanogaster-FlyFactorSurvey-CG3407_SOLEXA_2.5_FBgn0031573
chrX4424070ACCCTGTCTTTCCCAAAAAAAAAAACACGCTAGCAGCGCCATCTGACGGGGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX4424071CCCTGTCTTTCCCAAAAAAAAAAACACGCTAGCAGCGCCATCTGACGGGGCNA
chrX4424143CCAAGTTGCAAAACCAATTAGATGTAGACCGCCACCCAGGGTTGCATCGCC
chrX4430049TAGGAATATTAAAAGCGTTAGGATCATGTTTCATTTATATTTGGGCGGGGC
chrX4424198CAATCGCCAATCGATTTCTTATCGGCCATTTTAAACATTTACTTGTAAGCTDmelanogaster-FlyFactorSurvey-pho_SANGER_10_FBgn0002521