Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
84533487.23667798947003e-060.6562846852887390.6278582360537140.419750039604071
84767780.7755730875637130.0002898650166872230.2302590307934610.065775686866002
84290980.1445630281978880.3371992314639680.002683088796962870.000296904289188102
84228410.08613003427262960.04388877155939350.2736631287334770.000786081453277649
83639210.4553632205547510.1396424136807230.3005242432398030.00104352171349721

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX8453348.AG.PASSAC=151GT1/10/01/11/11/11/10/01/11/11/11/11/10/01/10/01/11/10/01/11/11/10/00/01/10/01/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/00/01/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/10/01/11/11/10/01/11/11/11/11/11/11/10/01/11/11/10/01/10/01/10/01/11/11/11/11/11/11/10/01/11/10/01/11/11/11/01/11/11/10/00/00/01/11/10/00/00/00/01/10/01/11/11/11/11/11/10/01/11/11/11/10/01/11/10/01/10/01/11/11/10/01/11/10/01/11/11/11/10/00/00/01/10/01/11/11/11/11/11/10/00/01/10/01/11/11/10/01/11/11/11/10/00/00/00/01/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/1
chrX8476778.AC.PASSAC=52GT0/01/10/00/00/00/00/00/00/00/01/11/10/00/00/01/10/00/00/00/01/10/00/01/10/10/00/00/00/00/00/00/00/00/00/01/10/10/00/10/00/00/10/01/10/00/00/00/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/10/01/10/01/11/10/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/10/01/11/10/00/01/10/00/01/11/10/00/00/00/10/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/10/00/00/00/10/00/00/00/11/10/00/00/00/00/01/10/00/00/00/00/01/10/01/11/10/00/00/10/10/00/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/10/00/11/10/00/01/10/01/10/00/00/01/10/10/00/00/00/00/0
chrX8429097.TTT,TGT.PASSAC=57,5GT0/00/00/01/01/00/01/00/00/00/00/00/01/00/01/10/01/10/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/02/01/10/01/11/00/00/00/00/00/00/00/00/00/00/00/01/01/01/00/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/21/10/00/00/00/00/00/01/00/00/00/01/11/00/02/01/10/00/00/01/00/00/00/00/00/00/00/00/01/00/00/01/00/00/01/00/00/00/00/00/00/00/01/00/01/10/00/00/00/00/01/00/01/00/00/00/01/00/01/00/00/00/01/11/01/11/01/01/00/00/00/00/00/00/00/00/01/00/00/00/01/01/00/00/02/21/00/01/10/00/00/01/01/10/01/00/01/01/00/01/10/01/11/01/11/10/01/01/01/00/00/00/01/12/21/00/0
chrX8429098.TTT,TTT.PASSAC=45,2GT0/00/00/00/00/00/00/00/01/01/00/00/00/01/10/00/00/01/11/10/00/00/00/01/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/01/10/01/00/00/00/00/01/01/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/00/00/10/01/00/00/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/00/01/00/20/00/00/00/00/00/00/01/10/00/01/00/00/01/00/00/12/10/01/10/00/01/00/01/01/00/01/01/00/11/10/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/10/00/10/00/00/00/01/01/01/00/00/00/00/00/00/01/00/00/01/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/11/00/00/00/01/0
chrX8422841.TA.PASSAC=48GT0/01/11/10/00/00/00/01/10/01/11/11/11/10/00/00/00/01/10/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/11/10/01/11/10/00/01/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/01/11/10/00/00/00/01/11/10/00/01/10/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/11/11/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/1
chrX8363921.GGGTTTG,GGGGTT,GGGGTTT,GGTTTT.PASSAC=23,4,6,5GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/03/01/10/00/00/00/01/00/00/03/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/01/10/00/00/03/00/00/20/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/40/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/10/04/00/01/10/00/00/00/00/03/30/00/10/00/00/00/01/00/00/02/20/00/00/00/00/00/00/30/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/04/41/00/01/13/00/01/10/00/04/40/01/10/00/00/00/00/00/00/00/00/40/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX8453348TTCTTAACGCATCTCATGGCTTTGAATAAGACTTTTTCCGAGGGTAGCGTC
chrX8476778CAAGGAAAACACCAACAACACCACACCGCCGCCCCATTTTCTTACCAATTTDmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-lmd_SOLEXA_5_FBgn0039039 , Dmelanogaster-FlyFactorSurvey-Opa_SANGER_5_FBgn0003002
chrX8429097TTTTTCGTATCTGAGCTTTTTTTTTTGTATGTGTGCTGCATTCTATCTATADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX8429098TTTTCGTATCTGAGCTTTTTTTTTTGTATGTGTGCTGCATTCTATCTATATDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768
chrX8422841AACGACTGGAATTTTAATGGGACTTATGGGTCGCGAGGCTCTATCGCCGCT
chrX8363921CATATATATTAATGTGTCATATAGGGGTTTTTTTTTTTTTGCCTAGAAATGNA