CoCo v2.0 Download Page

CoCo has been successfully installed on Linux Suse, RedHat and MacOS X.
To install CoCo, you need to first install or make sure that following softwares are already available on your server:

• JAVA (greater than 1.5)
• Ant (greater than 1.5)
• Tomcat (greater than 5.5.20)
• MySQL (tested 4.0.* and 4.1.* but any version supporting InnoDB table engine should work)
• R and additional R/Bioconductor libraries (see below)

To download and install JAVA, Tomcat, Ant and MySQL, please refer to official websites. CoCo 2.0 now works with R >=2.1 including the latest R 2.3.1. Should you experience problems with the lastest R 2.3.1 version, try to revert to 2.1. We provide in the old CoCo 1.0 download page all needed R libraries compliant with CoCo as well as the R 2.1.0 source distribution.

R and R libraries:

• Download and install R, please refer to installation instructions at R official web site
• Download the gd-2.0.33.tar.gz library if it is not already installed on your system
• CoCo also uses Bioconductor geneplotter package (which requires Biobase and annotate from Bioconductor). Please follow instructions at Bioconductor web site to install these libraries
• All needed R libraries are included in the CoCo download.

Once you installed R, JAVA, Ant, MySQL and Tomcat please refer to the CoCo installation manual to install R libraries and CoCo.

• Installation and User Manual is found in the doc directory of the CoCo distribution
• CoCo application : coco_2_0_1.tar.gz