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Publications

Chip (Ldb1) is a putative cofactor of Zelda forming a functional bridge to CBP during zygotic genome activation
Galouzis CC, Kherdjemil Y, Forneris M, Viales RR, Marco-Ferreres R, Furlong EEM – Molecular Cell
Integrating genetic variation with deep learning provides context for variants impacting transcription factor binding during embryogenesis
Sigalova O*, Forneris M*, Stojanovska F, Zhao B, Viales RR, Rabinowitz A, Hamal F, Ballester B, Zaugg JB, Furlong EEM – Genome Research
Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation
Pollex T, Rabinowitz A, Gambetta MC, Marco-Ferreres R, Viales RR, Jankowski A, Schaub C, Furlong EEM – Nature Genetics

Current research interests

The precise regulation of gene expression is essential for almost all biological processes – it is an essential part of how cells and organisms respond to external signals and defines the diversity of cell types in our body.  Complex patterns of spatial and temporal gene expression are a central driving force for the progressive restriction of cell fates during embryogenesis. How a single genome can generate such a diversity of cells, and how transcriptional networks control and buffer the process of differentiation, are the two overarching questions in the lab. To tackle these, the group optimises and pushes genomic methods for use within complex multicellular embryos. We make use of the systematic, unbiased nature of genomics, the power of Drosophila genetics, high-resolution imaging and approaches from developmental and evolutionary biology to understand how the genome is regulated and organised during development.

Genome Regulation & Enhancer Function

Exploring how enhancers and transcription factors orchestrate spatiotemporal gene expression during embryogenesis.
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3D Chromatin Topology

Investigating enhancer-promoter loops and the role of chromatin topology in gene regulation using imaging, genomics & genetics.
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Gene Regulatory Networks during Tissue & Embryonic Development

Combining single cell genomics, genome engineering, optogenetic perturbations, and computational modelling to dissect and predict regulatory programmes driving embryonic development.
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Genetic Variation & Robustness in Developmental Programs

Leveraging natural sequence variation as a perturbation tools to uncover how variation impacts transcription factor binding, enhancer function and the regulation of developmental programmes
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Simone Procaccia

Ph.D. Student

Ramile Dilshat

Postdoctoral Fellow

Emmanouil Stergioudis

Ph.D. Student

Teresa Luisa Seubert

Ph.D. Student

Karol Nowosad

Postdoctoral Fellow

Jeremie Gaudez

Postdoctoral Fellow

Lab members

Meet our current lab members and alumni

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