Zinzen RP*, Girardot C*, Gagneur J*, Braun M, Furlong EE
* These authors contributed equally to this work.
Nature, 462(7269):65-70.
Read it on:
Europe PMC | DOI:
10.1038/nature08531
Data
All coordinates are relative to the dm2 assembly.
We provide the ChIP data produced for Zinzen et al. 2009:- ChIP-CRM Atlas ChIP-CRM coordinates and TFs occupancy (tab-delimited file, with comments describing the format at the top of the file)
- CRM coordinates in BED format
- ChIP-chip signal (dm2), i.e. log2(IP/Mock), for each condition, as bigwig files (15 files ~380Mb)
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Although not formally published, here is the link to the ChIP-chip signal files recomputed for dm3
- ChIP-chip signal for dm3 (15 bigwig files ~380Mb)
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- R code (archive), SVM code and parameters selection (Supplementary File 1, refer to README.txt file in archive)