Cannavò E*, Koelling N*, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E‡, Furlong EE‡
Nature, 541(7637):402-406.
Read it on:
Europe PMC | DOI:
10.1038/nature20802
Data
We provide the matrix of 3′ Tag-Seq read counts for all 10,536 measured genes in all 254 samples (including replicates). We also provide the data used to perform our QTL testing with LIMIX.
- 3′ TagSeq raw read counts genes all 254 samples. This is the matrix of 3′ Tag-Seq read counts for all 10,536 measured genes in all 254 samples (including replicates), covering 80 DGRP lines and three stages of embryogenesis. It gives the per-gene read counts calculated as the sum of summit read counts in all 3′ Tag-Seq regions uniquely associated with the gene (Flybase annotation v5.47)
- Data for QTL testing with LIMIX. This is input and output files from the gene-based (gene eQTL) and peak-based (3iQTL) QTL testing in LIMIX (HDF5 format). It includes genotype and phenotype matrices as well as p-values and betas for all tested variants and all tests. See readme for details.
- Accession E-MTAB-4722 — 3′-Tag-Seq at three embryonic time points during embryogenesis in 82 Drosophila melanogaster lines from from the Drosophila Genetic reference Panel (DGRP)
- Accession E-MTAB-4723 — RNA-seq of coding RNA from 22 strains of Drosophila melanogaster from the DGRP at embryonic time point 10-12 hours after egg laying
- Accession E-MTAB-4694 — RNA-seq of coding RNA in F1 crosses of two pairs of DGRP lines at three embryonic time points during embryogenesis