scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation

Heinen T*, Secchia S*, Reddington JP, Zhao B, Furlong EEM‡, Stegle O‡
These authors contributed equally to this work.
Genome Biology, 2022 Jan.
Read it on: Genome Biology | DOI: 10.1186/s13059-021-02593-8

Data

Raw data are available at ArrayExpress:

Accession E-MTAB-10240 — Sequencing data

We provide peaks:

cusanovich_dm6_peaks.txt.gz
cusanovich_dm6_peaks_1kb.txt.gz

We provide cell index tables:

SS148.readdepth_auto.cells_indextable.txt
SS157.readdepth_auto.cells_indextable.txt
SS158.readdepth_auto.cells_indextable.txt
SS159.readdepth_auto.cells_indextable.txt

We provide peak count matrices:

SS148.cusanovich_dm6_peaks_1kb.wasp.counts_allele1.txt.gz
SS148.cusanovich_dm6_peaks_1kb.wasp.counts_allele2.txt.gz
SS148.cusanovich_dm6_peaks_1kb.wasp.counts_total.txt.gz
SS148.cusanovich_dm6_peaks.nowasp.counts_total.txt.gz
SS157.cusanovich_dm6_peaks_1kb.wasp.counts_allele1.txt.gz
SS157.cusanovich_dm6_peaks_1kb.wasp.counts_allele2.txt.gz
SS157.cusanovich_dm6_peaks_1kb.wasp.counts_total.txt.gz
SS157.cusanovich_dm6_peaks.nowasp.counts_total.txt.gz
SS158.cusanovich_dm6_peaks_1kb.wasp.counts_allele1.txt.gz
SS158.cusanovich_dm6_peaks_1kb.wasp.counts_allele2.txt.gz
SS158.cusanovich_dm6_peaks_1kb.wasp.counts_total.txt.gz
SS158.cusanovich_dm6_peaks.nowasp.counts_total.txt.gz
SS159.cusanovich_dm6_peaks_1kb.wasp.counts_allele1.txt.gz
SS159.cusanovich_dm6_peaks_1kb.wasp.counts_allele2.txt.gz
SS159.cusanovich_dm6_peaks_1kb.wasp.counts_total.txt.gz
SS159.cusanovich_dm6_peaks.nowasp.counts_total.txt.gz