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Enhancer loops appear stable during development and are associated with paused polymerase Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. (2014) Nature 512(7512):96-100. doi: 10.1038/nature13417 | Europe PMC | doi

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis Ciglar L, Girardot C, Wilczyński B, Braun M, Furlong EE. (2014) Development 141:2633-2643. doi: 10.1242/dev.101956 | Europe PMC | doi

A conserved role for Snail as a potentiator of active transcription Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. (2014) Genes Dev. 28:167-181. doi: 10.1101/gad.230953.113 | Europe PMC | doi

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. (2012) Nat. Genet. 44(2):148-156. doi: 10.1038/ng.1064 | Europe PMC | doi

A transcription factor collective defines cardiac cell fate and reflects lineage history Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. (2012) Cell 148(3):473-486. doi: 10.1016/j.cell.2012.01.030 | Europe PMC | doi

Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE. (2010) PLoS Genet. 6(7):e1001014. doi: 10.1371/journal.pgen.1001014 | Europe PMC | doi

Dynamic CRM occupancy reflects a temporal map of developmental progression Wilczyński B, Furlong EE. (2010) Mol. Syst. Biol. 6:383. doi: 10.1038/msb.2010.35 | Europe PMC | doi

Combinatorial binding predicts spatio-temporal cis-regulatory activity Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. (2009) Nature 462(7269):65-70. doi: 10.1038/nature08531 | Europe PMC | doi

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE. (2009)

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network Jakobsen JS, Braun M, Astorga J, Gustafson EH, Sandmann T, Karzynski M, Carlsson P, Furlong EE. (2007) Genes Dev. 21(19):2448-2460. doi: 10.1101/gad.437607 | Europe PMC | doi

A core transcriptional network for early mesoderm development in Drosophila melanogaster Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. (2007) Genes Dev. 21(4):436-449. doi: 10.1101/gad.1509007 | Europe PMC | doi

A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. (2006) Dev. Cell 10(6):797-807. doi: 10.1016/j.devcel.2006.04.009 | Europe PMC | doi